目次

Introduction Reproducible Research Literature Good and Bad Practices Barriers A First Look Setup Minimal Examples Quick Reporting Extracting R Code Editors RStudio LYX Emacs/ESS Other Editors Document Formats Input Syntax Document Formats Output Renderers R Scripts Text OutputInline Output Chunk Output Tables Automatic Printing Themes Graphics Graphical Devices Plot Recording Plot Rearrangement Plot Size in Output Extra Output Options The tikz Device Figure Environment Figure Path Cache Implementation Write Cache When to Update Cache Side Effects Chunk Dependencies Load Cache Manually Other Options Cross ReferenceChunk Reference Code Externalization Child Documents Hooks Chunk HooksExamples Language EnginesDesign Languages and Tools Persistent Sessions Tricks and Solutions Chunk OptionsPackage Options Typesetting Utilities Debugging Multilingual Support Publishing Reports RStudio Pandoc HTML5 Slides Jekyll WordPress R Markdown OverviewPandoc’s Markdown Extensions Output Formats Interactive Documents with Shiny Extending R Markdown v2 Changes in R Markdown from v1 to v2 Applications Homework Serve Dynamic Documents Web Site and BloggingPackage Vignettes Books Literate Programming for R Packages Other Tools Sweave Other R Packages Python Packages More Tools Appendix: Internals Bibliography Index