目次

1. ChIP and ChIP-Related Techniques: Expanding the Fields of Application and Improving ChIP Performance             Neus Visa and Antonio Jordán-Pla   2. Considerations on Experimental Design and Data Analysis of Chromatin Immunoprecipitation Experiments             Antonio Jordán-Pla and Neus Visa   3. How to Combine ChIP with qPCR             Patrik Asp   4. Analysis of Protein-DNA Interaction by Chromatin Immunoprecipitation and DNA Tiling Microarray (ChIP-on-Chip)             Hui Gao and Chunyan Zhao   5. Chromatin Immunoprecipitation from Mouse Embryonic Tissue or Adherent Cells in Culture, Followed by Next Generation Sequencing             Mário A.F. Soares and Diogo S. Castro   6. Chromatin RNA Immunoprecipitation (ChRIP)             Tanmoy Mondal, Santhilal Subhash, and Chandrasekhar Kanduri   7. DNA Accessibility by MNase Digestions             Ann-Kristin Östlund Farrants   8. Characterization of the Nucleosome Landscape by Micrococcal Nuclease-Sequencing (MNase-Seq)             Wieteke Anna Maria Hoeijmakers and Richárd Bártfai   9. ChIP-re-ChIP: Co-Occupancy Analysis by Sequential Chromatin Immunoprecipitation             Timothy V. Beischlag, Gratien G. Prefontaine, and Oliver Hankinson   10. Sm-ChIPi: Single-Molecule Chromatin Immunoprecipitation Imaging             Roubina Tatavosian, and Xiaojun Ren   11. Chromatin Immunoprecipitation of Skeletal Muscle Tissue             Amarjit Saini and Carl Johan Sundberg   12. Chromatin Immunoprecipitation Assay in the Hyperthermoacidophilic Crenarchaeon, Sulfolobus acidocaldarius             Kun Wang and Ann-Christin Lindås   13. Using Intra-ChIP to Measure Protein-DNA Interactions in Intracellular Pathogens             Brett R. Hanson and Ming Tan   14. Native Chromatin Immunoprecipitation-Sequencing (ChIP-Seq) from Low Cell Numbers             Teodora Ribarska and Gregor D. Gilfillan   15. MOBE-ChIP: Probing Cell Type-Specific Binding Through Large-Scale Chromatin Immunoprecipitation             Shenqi Wang and On Sun Lau   16. Multiplexed ChIP-Seq Using Direct Nucleosome Barcoding: A Tool for High-Throughput Chromatin Analysis             Christophe D. Chabbert, Sophie H. Adjalley, Lars M. Steinmetz, and Vicente Pelechano   17. Analysis of ChIP-Seq Data in R/Bioconductor             Ines de Santiago and Thomas Carroll   18. Spike-In Normalization of ChIP Data Using DNA-DIG-Antibody Complex             Andrea B. Eberle