Metabolic Network Reconstruction and Modeling<Vol.1716> 1st ed. 2018(Methods in Molecular Biology Vol.1716) H XI, 410 p. 17
目次
Preface…Table of Contents…Contributing Authors…1. Reconstructing High-Quality Large-Scale Metabolic Models with merlinOscar Dias, Miguel Rocha, Eugénio Campos Ferreira, and Isabel Rocha2. Analyzing and Designing Cell Factories with OptFluxPaulo Vilaça, Paulo Maia, Hugo Giesteira, Isabel Rocha, and Miguel Rocha3. The MONGOOSE Rational Arithmetic ToolboxChristopher Le and Leonid Chindelevitch4. The FASTCORE Family: For the Fast Reconstruction of Compact Context-Specific Metabolic Networks ModelsMaria Pires Pacheco and Thomas Sauter5. Reconstruction and Analysis of Central Metabolism in MicrobesJanaka N. Edirisinghe, José P. Faria, Nomi L. Harris, Benjamin H. Allen, and Christopher S. Henry6. Using PSAMM for the Curation and Analysis of Genome-Scale Metabolic ModelsKeith Dufault-Thompson, Jon Lund Steffensen, and Ying Zhang7. Integration of Comparative Genomics with Genome-Scale Metabolic Modeling to Investigate Strain-Specific Phenotypical DifferencesJonathan Monk and Emanuele Bosi8. Temple-Assisted Metabolic Reconstruction and Assembly of Hybrid Bacterial ModelsTiziano Vignolini, Alessia Mengoni, and Marco Fondi9. Integrated Host-Pathogen Metabolic ReconstructionAnu Raghunathan and Neema Jamshidi10. Metabloic Model Reconstruction and Analysis of an Artificial Microbial EcosystemChao Ye, Nan Xu, Xiulai Chen, and Liming Liu11. RNA Sequencing and Analysis in Microorganisms for Metabolic Network ReconstructionEva Pinatel and Clelia Peano12. Differential Proteomics Based on 2D-Difference In-Gel Electrophoresis and Tandem Mass Spectrometry for the Elucidation of Biological Processes in Antibiotic-Producer Bacterial StrainsGiuseppe Gallo and Andrea Scaloni13. Techniques for Large-Scale Bacterial Genome Manipulation and Characterization of the Mutants with respect to In Silico Metabolic ReconstructionsGeorge C. diCenzo and Turlough M. Finan14. Computational Prediction of Synthetic Lethals in Genome-Scale Metabolic Models using Fast-SLKarthik Raman, Aditya Pratapa, Omkar Mohite, and Shankar Balachandran15. Coupling Fluxes, Enzymes, and Regulation in Genome-Scale Metabolic ModelsPaul A. Jensen16. Dynamic Flux Balance Analysis using DFBAlabJose Alberto Gomez and Paul I. Barton17. Designing Optimized Production Hosts by Metabolic ModelingChristian Jungreuthmayer, Matthias P. Gerstl, David A. Peña Navarro, Michael Hanscho, David E. Ruckerbauer, and Jürgen Zanghellini18. Optimization of Multi-Omic Genome-Scale Models: Methodologies, Hands-On Tutorial and PerspectivesSupreeta Vijayakumar, Max Conway, Pietro Lió, and Claudio Angione
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